ClustalW is a complex and reliable piece of software developed to provide genetics professionals with an effective method of performing multiple alignment tasks, also being able to create. The link you used is for the ClustalO executable file. There's no need to run configure or install anything. From the Clustal website: 'UNIX and Mac users should rename the downloaded file to clustalo and place in the location of their choice. This file may need to be made executable e.g.: chmod u+x clustalo'.
Clustalw Download Linux
Help
Please have a look at Clustal X's builtin help menu or if you are using Clustal W use
clustalw[2] -help or /help
(depending on your platform and version of Clustal). Online versions (which might be out of date) can be found here: Clustal W and Clustal X. There are a couple of references on how to use Clustal W/X on the net. A very nice tutorial which also covers advanced features like using secondary structures for profile alignment is 'Using Clustal X for multiple sequence' by Jarno Tuimala (local mirror). References
- Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.
(2007). Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948. - Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD.
(2003). Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res., 31, 3497-3500. - Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ.
(1998). Multiple sequence alignment with Clustal X. Trends Biochem Sci., 23, 403-405. - Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG.
(1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882. - Higgins DG, Thompson JD, Gibson TJ.
(1996). Using CLUSTAL for multiple sequence alignments. Methods Enzymol., 266, 383-402. - Thompson JD, Higgins DG, Gibson TJ.
(1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680. - Higgins DG.
(1994). CLUSTAL V: multiple alignment of DNA and protein sequences. Methods Mol Biol., 25, 307-318 - Higgins DG, Bleasby AJ, Fuchs R.
(1992). CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci., 8, 189-191. - Higgins,DG and Sharp,PM
(1989). Fast and sensitive multiple sequence alignments on a microcomputer. Comput. Appl. Biosci., 5, 151-153. - Higgins,D.G. and Sharp,P.M.
(1988). CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene, 73, 237-244.
Clustal X 2.0.11
- Name:Clustal X
- License:Freeware
- Developer:European Bioinformatics Institute
- Downloads:78
- Rating:2 / 5
- OS:Windows All
- Size:4.7 MB
Clustal X 2.0.11 Description:
Clustal X is a Windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for performing multiple sequence and profile alignments and analysing the results.
The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated allowing you to highlight conserved features in the alignment. The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment.
You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.
Alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.
ClustalW is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences.
It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. You can see evolutionary relationships via viewing Cladograms or Phylograms.
The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated allowing you to highlight conserved features in the alignment. The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment.
You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.
Alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.
ClustalW is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences.
It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. You can see evolutionary relationships via viewing Cladograms or Phylograms.
Related searches:
dna - alignment
Clustal X security information
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Clustal X Software
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